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semantic biomedical relations

Friday 11 July 2008

See also

- biomedical literature
- biomedicine
- biomedical knowledge
- automated information extraction tools
- named entity recognition of well-defined objects (Genes, Proteins)
- extraction of relations between recognized entities
- detection of relations
- classification of relation type
- Conditional Random Fields
- named entity recognition
- identification of semantic relations between diseases and treatments
- annotated PubMed abstracts
- identification of relations between genes and diseases from a set of concise phrases, so-called GeneRIF (Gene Reference Into Function) phrases.
- entities
- extraction of entities
- gene-disease network
- semantic associations between genes and diseases


- Bundschus M, Dejori M, Stetter M, Tresp V, Kriegel HP. Extraction of semantic biomedical relations from text using conditional random fields. BMC Bioinformatics. 2008 Apr 23;9:207. PMID: 18433469